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ICS
2009
Tsinghua U.
16 years 1 months ago
High-performance CUDA kernel execution on FPGAs
In this work, we propose a new FPGA design flow that combines the CUDA programming model from Nvidia with the state of the art high-level synthesis tool AutoPilot from AutoESL, to...
Alexandros Papakonstantinou, Karthik Gururaj, John...
IPPS
2009
IEEE
16 years 1 months ago
Implementing and evaluating multithreaded triad census algorithms on the Cray XMT
Commonly represented as directed graphs, social networks depict relationships and behaviors among social entities such as people, groups, and organizations. Social network analysi...
George Chin Jr., Andrès Márquez, Sut...
BMCBI
2007
133views more  BMCBI 2007»
15 years 6 months ago
An efficient pseudomedian filter for tiling microrrays
Background: Tiling microarrays are becoming an essential technology in the functional genomics toolbox. They have been applied to the tasks of novel transcript identification, elu...
Thomas E. Royce, Nicholas Carriero, Mark B. Gerste...
IJFCS
2006
130views more  IJFCS 2006»
15 years 6 months ago
Mealy multiset automata
We introduce the networks of Mealy multiset automata, and study their computational power. The networks of Mealy multiset automata are computationally complete. 1 Learning from Mo...
Gabriel Ciobanu, Viorel Mihai Gontineac
BMCBI
2006
122views more  BMCBI 2006»
15 years 6 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...