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BMCBI
2006
105views more  BMCBI 2006»
15 years 6 months ago
CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
Background: One-dimensional protein structures such as secondary structures or contact numbers are useful for three-dimensional structure prediction and helpful for intuitive unde...
Akira R. Kinjo, Ken Nishikawa
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BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy
Background: In the fly Drosophila melanogaster, new genetic, physiological, molecular and behavioral techniques for the functional analysis of the brain are rapidly accumulating. ...
Arnim Jenett, Johannes E. Schindelin, Martin Heise...
BMCBI
2006
111views more  BMCBI 2006»
15 years 6 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
ENTCS
2006
97views more  ENTCS 2006»
15 years 6 months ago
VyrdMC: Driving Runtime Refinement Checking with Model Checkers
This paper presents VyrdMC, a runtime verification tool we are building for concurrent software components. The correctness criterion checked by VyrdMC is refinement: Each executi...
Tayfun Elmas, Serdar Tasiran
BMCBI
2007
113views more  BMCBI 2007»
15 years 6 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
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