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BMCBI
2006
113views more  BMCBI 2006»
15 years 6 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
CGA
2006
15 years 6 months ago
The Distance-Similarity Metaphor in Region-Display Spatializations
n explore and understand abstract information spaces as if they were real geographic spaces. According to the distance-similarity metaphor1 one of the most popular spatial metaphor...
Sara Irina Fabrikant, Daniel R. Montello, David M....
BMCBI
2007
247views more  BMCBI 2007»
15 years 6 months ago
A survey of DNA motif finding algorithms
Background: Unraveling the mechanisms that regulate gene expression is a major challenge in biology. An important task in this challenge is to identify regulatory elements, especi...
Modan K. Das, Ho-Kwok Dai
IANDC
2006
121views more  IANDC 2006»
15 years 6 months ago
Comparing operational models of name-passing process calculi
We study three operational models of name-passing process calculi: coalgebras on (pre)sheaves, indexed labelled transition systems, and history dependent automata. The coalgebraic...
Marcelo P. Fiore, Sam Staton
CN
2007
76views more  CN 2007»
15 years 6 months ago
A practical and robust inter-domain marking scheme for IP traceback
A practical and robust inter-domain marking scheme for IP traceback is proposed. We first identify six drawbacks of Probabilistic Packet Marking (PPM), and then contrive a synerg...
Zhiqiang Gao, Nirwan Ansari
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