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» Computational Challenges of Systems Biology
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ASM
2005
ASM
16 years 11 days ago
State Exploration with Multiple State Groupings
Abstract. Exploration algorithms are relevant to the industrial practice of gentest cases from an abstract state machine whose runs define the predicted behavior of the software s...
Colin Campbell, Margus Veanes
175
Voted
CONCUR
2005
Springer
16 years 11 days ago
A Compositional Approach to the Stochastic Dynamics of Gene Networks
We propose a compositional approach to the dynamics of gene regulatory networks based on the stochastic π-calculus, and develop a representation of gene network elements which can...
Luca Cardelli
171
Voted
ICCS
2005
Springer
16 years 10 days ago
Modelling Dynamics of Genetic Networks as a Multiscale Process
A key phenomenon in the dynamics of genetic networks is the cell cycle. In the study of this phenomenon, an important task is to understand how many processes, acting on different...
Xilin Wei, Roderick V. N. Melnik, Gabriel Moreno-H...
CIS
2004
Springer
16 years 7 days ago
Algorithms for Loosely Constrained Multiple Sequence Alignment
For finding accurate and biologically meaningful multiple sequence alignment, it is required to consider a loosely constrained version of multiple sequence alignment. This paper is...
Bin Song, Fengfeng Zhou, Guoliang Chen
ASM
2010
ASM
15 years 12 months ago
Formal Probabilistic Analysis: A Higher-Order Logic Based Approach
Traditionally, simulation is used to perform probabilistic analysis. However, it provides less accurate results and cannot handle large-scale problems due to the enormous CPU time ...
Osman Hasan, Sofiène Tahar