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» Computational Challenges of Systems Biology
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IPPS
2009
IEEE
16 years 1 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
BMCBI
2005
212views more  BMCBI 2005»
15 years 6 months ago
PAGE: Parametric Analysis of Gene Set Enrichment
Background: Gene set enrichment analysis (GSEA) is a microarray data analysis method that uses predefined gene sets and ranks of genes to identify significant biological changes i...
Seon-Young Kim, David J. Volsky
SODA
2008
ACM
126views Algorithms» more  SODA 2008»
15 years 8 months ago
On distributing symmetric streaming computations
A common approach for dealing with large data sets is to stream over the input in one pass, and perform computations using sublinear resources. For truly massive data sets, howeve...
Jon Feldman, S. Muthukrishnan, Anastasios Sidiropo...
WORDS
2003
IEEE
15 years 12 months ago
Improving Dependability of Service Oriented Architectures for Pervasive Computing
Service Oriented Programming - which combines Distributed Object Compunting, Component Based and webbased concepts - has recently emerged as a promising approach to develop dynami...
Domenico Cotroneo, Cristiano di Flora, Stefano Rus...
MM
2006
ACM
178views Multimedia» more  MM 2006»
16 years 18 days ago
Multimedia signal processing for behavioral quantification in neuroscience
While there have been great advances in quantification of the genotype of organisms, including full genomes for many species, the quantification of phenotype is at a comparatively...
Peter Andrews, Haibin Wang, Dan Valente, Jih&egrav...