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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
16 years 14 days ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
KES
2007
Springer
16 years 8 days ago
Inductive Concept Retrieval and Query Answering with Semantic Knowledge Bases Through Kernel Methods
This work deals with the application of kernel methods to structured relational settings such as semantic knowledge bases expressed in Description Logics. Our method integrates a n...
Nicola Fanizzi, Claudia d'Amato
CIBCB
2005
IEEE
15 years 11 months ago
Toward Protein Structure Analysis with Self-Organizing Maps
- Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
Lutz Hamel, Gongqin Sun, Jing Zhang
ICDM
2005
IEEE
125views Data Mining» more  ICDM 2005»
15 years 11 months ago
Alternate Representation of Distance Matrices for Characterization of Protein Structure
The most suitable method for the automated classification of protein structures remains an open problem in computational biology. In order to classify a protein structure with an...
Keith Marsolo, Srinivasan Parthasarathy
ASM
2003
ASM
15 years 11 months ago
A Framework for Proving Contract-Equipped Classes
r in: Abstract State Machines 2003 — Advances in Theory and Applications, Proc. 10th International Workshop, Taormina, Italy, March 3-7, 2003, eds. Egon Boerger, Angelo Gargantin...
Bertrand Meyer