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PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
15 years 4 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...
BMCBI
2011
14 years 9 months ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
SODA
2010
ACM
213views Algorithms» more  SODA 2010»
16 years 3 months ago
Regular Expression Matching with Multi-Strings
Regular expression matching is a key task (and often computational bottleneck) in a variety of software tools and applications. For instance, the standard grep and sed utilities, ...
Philip Bille, Mikkel Thorup
BIBM
2008
IEEE
217views Bioinformatics» more  BIBM 2008»
16 years 19 days ago
Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction
The study of gene function is critical in various genomic and proteomic fields. Due to the availability of tremendous amounts of different types of protein data, integrating thes...
Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon ...
CPM
2007
Springer
115views Combinatorics» more  CPM 2007»
16 years 10 days ago
Two-Dimensional Range Minimum Queries
We consider the two-dimensional Range Minimum Query problem: for a static (m × n)-matrix of size N = mn which may be preprocessed, answer on-line queries of the form “where is t...
Amihood Amir, Johannes Fischer, Moshe Lewenstein