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FCCM
2006
IEEE
133views VLSI» more  FCCM 2006»
16 years 13 days ago
A Scalable FPGA-based Multiprocessor
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
15 years 12 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
APPROX
2006
Springer
126views Algorithms» more  APPROX 2006»
15 years 10 months ago
Better Approximations for the Minimum Common Integer Partition Problem
Abstract. In the k-Minimum Common Integer Partition Problem, abbreviated k-MCIP, we are given k multisets X1, . . . , Xk of positive integers, and the goal is to find an integer mu...
David P. Woodruff
IANDC
2006
97views more  IANDC 2006»
15 years 6 months ago
Pure bigraphs: Structure and dynamics
Abstract Bigraphs are graphs whose nodes may be nested, representing locality, independently of the edges connecting them. They may be equipped with reaction rules, forming a bigra...
Robin Milner
JCB
2007
94views more  JCB 2007»
15 years 6 months ago
A Quantile Method for Sizing Optical Maps
Optical mapping is an integrated system for the analysis of single DNA molecules. It constructs restriction maps (noted as “optical map”) from individual DNA molecules present...
Haifeng Li, Anton Valouev, David C. Schwartz, Mich...