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ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
15 years 6 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...
BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
15 years 6 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
IJFCS
2002
58views more  IJFCS 2002»
15 years 6 months ago
Vector Algorithms for Approximate String Matching
Vector algorithms allow the computation of an output vector r = r1r2 :::rm given an input vector e = e1e2 :::em in a bounded number of operations, independent of m the length of t...
Anne Bergeron, Sylvie Hamel
NECO
2007
87views more  NECO 2007»
15 years 6 months ago
Reinforcement Learning State Estimator
cal networks in the learning of abstract and effector-specific representations of motor sequences. Neuroimage. 32, 714-727. (Neuroimage Editor’s Choice Award, 2006) Daw, N. D. Do...
Jun Morimoto, Kenji Doya
IWPEC
2004
Springer
15 years 12 months ago
Perfect Path Phylogeny Haplotyping with Missing Data Is Fixed-Parameter Tractable
Abstract. Haplotyping via perfect phylogeny is a method for retrieving haplotypes from genotypes. Fast algorithms are known for computing perfect phylogenies from complete and erro...
Jens Gramm, Till Nierhoff, Till Tantau