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BIOINFORMATICS
2011
14 years 10 months ago
When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...
Gábor Iván, Vince Grolmusz
ISI
2007
Springer
16 years 22 days ago
An LDA-based Community Structure Discovery Approach for Large-Scale Social Networks
Abstract— Community discovery has drawn significant research interests among researchers from many disciplines for its increasing application in multiple, disparate areas, inclu...
Haizheng Zhang, Baojun Qiu, C. Lee Giles, Henry C....
VISSYM
2004
15 years 8 months ago
Case Study: Visualization of annotated DNA sequences
DNA sequences and their annotations form ever expanding data sets. Proper explorations of such data sets require new tools for visualization and analysis. In this case study, we h...
Tim H. J. M. Peeters, Huub van de Wetering, Mark W...
JCB
2008
144views more  JCB 2008»
15 years 6 months ago
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
Multi-break rearrangements break a genome into multiple fragments and further glue them together in a new order. While 2-break rearrangements represent standard reversals, fusions...
Max A. Alekseyev
BMCBI
2005
152views more  BMCBI 2005»
15 years 6 months ago
An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem
Background: The protein folding problem is a fundamental problems in computational molecular biology and biochemical physics. Various optimisation methods have been applied to for...
Alena Shmygelska, Holger H. Hoos