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BMCBI
2004
150views more  BMCBI 2004»
15 years 6 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
ECOI
2007
101views more  ECOI 2007»
15 years 6 months ago
Reasoning about taxonomies in first-order logic
Experts often disagree about the organization of biological taxa. The shifting definitions of taxonomic names complicate otherwise simple queries concerning these taxa. For examp...
David Thau, Bertram Ludäscher
NAR
2011
234views Computer Vision» more  NAR 2011»
14 years 9 months ago
The UCSC cancer genomics browser: update 2011
The UCSC Cancer Genomics Browser (https:// genome-cancer.ucsc.edu) comprises a suite of web-based tools to integrate, visualize and analyze cancer genomics and clinical data. The ...
J. Zachary Sanborn, Stephen C. Benz, Brian Craft, ...
RECOMB
2008
Springer
16 years 7 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
RECOMB
2007
Springer
16 years 7 months ago
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...
Hiroyuki Kuwahara, Chris J. Myers