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JCB
2008
71views more  JCB 2008»
15 years 6 months ago
Short Quartet Puzzling: A New Quartet-Based Phylogeny Reconstruction Algorithm
Quartet-based phylogeny reconstruction methods, such as Quartet Puzzling, were introduced in the hope that they might be competitive with maximum likelihood methods, without being...
Sagi Snir, Tandy Warnow, Satish Rao
193
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FCCM
2009
IEEE
169views VLSI» more  FCCM 2009»
16 years 1 months ago
RC-BLASTn: Implementation and Evaluation of the BLASTn Scan Function
BLASTn is a tool universally used by biologists to identify similarities between nucleotide based biological genome sequences. This report describes an FPGA based hardware impleme...
Siddhartha Datta, Parag Beeraka, Ron Sass
RECOMB
2006
Springer
16 years 7 months ago
A Parsimony Approach to Genome-Wide Ortholog Assignment
The assignment of orthologous genes between a pair of genomes is a fundamental and challenging problem in comparative genomics, since many computational methods for solving various...
Zheng Fu, Xin Chen, Vladimir Vacic, Peng Nan, Yang...
ICPR
2008
IEEE
16 years 1 months ago
An extended version of the k-means method for overlapping clustering
This paper deals with overlapping clustering, a trade off between crisp and fuzzy clustering. It has been motivated by recent applications in various domains such as information r...
Guillaume Cleuziou
ICPR
2008
IEEE
16 years 1 months ago
Microarray image analysis based on an evolutionary approach
1 Biological conclusions reached during microarray experiments can be greatly affected by human intervention, which is currently required in microarray image analysis. Therefore, a...
Eleni Zacharia, Dimitris Maroulis