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189
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RECOMB
2002
Springer
16 years 7 months ago
2002
Springer
We present an original approach to identifying sequence variants in a mixed DNA population from sequence trace data. The heart of the method is based on parsimony: given a wildtyp...
147
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RECOMB
2001
Springer
16 years 7 months ago
2001
Springer
Phylogenetic footprinting is a comparative genomics approach for predicting transcription factor binding sites, where a set of orthologous regulatory regions are compared and short...
143
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RECOMB
2001
Springer
16 years 7 months ago
2001
Springer
We address possible limitations of publicly available data sets of yeast gene expression. We study the predictability of known regulators via time-series analysis, and show that l...
185
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RECOMB
2001
Springer
16 years 7 months ago
2001
Springer
For the last twenty years fragment assembly in DNA sequencing followed the "overlap - layout - consensus" paradigm that is used in all currently available assembly tools...
165
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LATA
2009
Springer
16 years 1 months ago
2009
Springer
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...