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RECOMB
2006
Springer
16 years 7 months ago
Simple and Fast Inverse Alignment
For as long as biologists have been computing alignments of sequences, the question of what values to use for scoring substitutions and gaps has persisted. While some choices for s...
John D. Kececioglu, Eagu Kim
RECOMB
2003
Springer
16 years 7 months ago
Haplotype reconstruction from SNP alignment
In this paper, we describe a method for statistical reconstruction of haplotypes from a set of aligned SNP fragments. We consider the case of a pair of homologous human chromosome...
Lei Li, Jong Hyun Kim, Michael S. Waterman
ISMB
1996
15 years 8 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
ICDE
2003
IEEE
101views Database» more  ICDE 2003»
16 years 8 months ago
XomatiQ: Living With Genomes, Proteomes, Relations and a Little Bit of XML
In this paper, we describe a system called XomatiQ to address the problem of integration, querying and correlation of biological data. XomatiQ is an integral part of the genomics ...
Sourav S. Bhowmick, Pedro Cruz, Amey V. Laud
ICML
1999
IEEE
16 years 7 months ago
Detecting Motifs from Sequences
The problemofmultipleglobalcomparisonin familiesof biologicalsequences has been wellstudied. Fewer algorithms have been developed for identifying local consensus patterns or motif...
Yuh-Jyh Hu, Suzanne B. Sandmeyer, Dennis F. Kibler