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BMCBI
2004
151views more  BMCBI 2004»
15 years 6 months ago
A computational approach for ordering signal transduction pathway components from genomics and proteomics Data
Background: Signal transduction is one of the most important biological processes by which cells convert an external signal into a response. Novel computational approaches to mapp...
Yin Liu, Hongyu Zhao
JCB
2006
125views more  JCB 2006»
15 years 6 months ago
Hypothesis Generation in Signaling Networks
Biological signaling networks comprise the chemical processes by which cells detect and respond to changes in their environment. Such networks have been implicated in the regulati...
Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, S...
SAB
2010
Springer
110views Optimization» more  SAB 2010»
15 years 5 months ago
How to Pick the Right One: Investigating Tradeoffs among Female Mate Choice Strategies in Treefrogs
Two main theories of female mate choice, that females either pick the best from the n closest males (best-of-n) or the closest with some minimum quality (min-threshold), make diffe...
Matthias Scheutz, Jack Harris, Sunny K. Boyd
NC
2008
122views Neural Networks» more  NC 2008»
15 years 6 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...
IPPS
2007
IEEE
16 years 27 days ago
On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors
1 Biological processes occurring inside cell involve multiple scales of time and length; many popular theoretical and computational multi-scale techniques utilize biomolecular simu...
Sadaf R. Alam, Pratul K. Agarwal