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CCGRID
2003
IEEE
15 years 12 months ago
An Overlay-Network Approach for Distributed Access to SRS
SRS is a widely used system for integrating biological databases. Currently, SRS relies only on locally provided copies of these databases. In this paper we propose a mechanism th...
Thomas Fuhrmann, Andrea Schafferhans, Thure Etzol
CF
2008
ACM
15 years 8 months ago
Cell-SWat: modeling and scheduling wavefront computations on the cell broadband engine
This paper contributes and evaluates a model and a methodology for implementing parallel wavefront algorithms on the Cell Broadband Engine. Wavefront algorithms are vital in sever...
Ashwin M. Aji, Wu-chun Feng, Filip Blagojevic, Dim...
BMCBI
2010
155views more  BMCBI 2010»
15 years 4 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
RECOMB
2009
Springer
16 years 7 months ago
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series
Abstract. Understanding the regulatory mechanisms that are responsible for an organism's response to environmental changes is an important question in molecular biology. A fir...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
RECOMB
2007
Springer
16 years 6 months ago
GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data
Genetic instability represents an important type of biological markers for cancer and many other diseases. Array Comparative Genome Hybridization (aCGH) is a high-throughput cytoge...
Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing