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CCGRID
2003
IEEE
16 years 2 days ago
An Overlay-Network Approach for Distributed Access to SRS
SRS is a widely used system for integrating biological databases. Currently, SRS relies only on locally provided copies of these databases. In this paper we propose a mechanism th...
Thomas Fuhrmann, Andrea Schafferhans, Thure Etzol
HYBRID
2003
Springer
15 years 12 months ago
Automated Symbolic Reachability Analysis; with Application to Delta-Notch Signaling Automata
Abstract. This paper describes the implementation of predicate abstraction techniques to automatically compute symbolic backward reachable sets of high dimensional piecewise affine...
Ronojoy Ghosh, Ashish Tiwari, Claire Tomlin
ASM
2000
ASM
15 years 11 months ago
Modeling the Dynamics of UML State Machines
We define the dynamic semantics of UML State Machines which integrate statecharts with the UML object model. The use of ASMs allows us (a) to rigorously model the event driven run...
Egon Börger, Alessandra Cavarra, Elvinia Ricc...
BICOB
2009
Springer
15 years 10 months ago
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Predictio
Protein-protein interaction plays critical roles in cellular functions. In this work, we propose a computational method to predict protein-protein interaction by using support vec...
Alvaro J. González, Li Liao
ICPR
2010
IEEE
15 years 10 months ago
Spatial Representation for Efficient Sequence Classification
We present a general, simple feature representation of sequences that allows efficient inexact matching, comparison and classification of sequential data. This approach, recently ...
Pavel Kuksa, Vladimir Pavlovic