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EACL
2006
ACL Anthology
15 years 8 months ago
Computing Term Translation Probabilities with Generalized Latent Semantic Analysis
Term translation probabilities proved an effective method of semantic smoothing in the language modelling approach to information retrieval. We use Generalized Latent Semantic Ana...
Irina Matveeva, Gina-Anne Levow
RECOMB
2008
Springer
16 years 7 months ago
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony
Understanding the variation of recombination rates across a given genome is crucial for disease gene mapping and for detecting signatures of selection, to name just a couple of app...
Jotun Hein, Rune B. Lyngsø, Yun S. Song
ALMOB
2008
95views more  ALMOB 2008»
15 years 6 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
RECOMB
2007
Springer
16 years 7 months ago
Improving Inversion Median Computation Using Commuting Reversals and Cycle Information
In the past decade, genome rearrangements have attracted increasing attention from both biologists and computer scientists as a new type of data for phylogenetic analysis. Methods ...
William Arndt, Jijun Tang
192
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ICCS
2001
Springer
15 years 11 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow