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186
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BMCBI
2010
15 years 6 months ago
2010
Background: A growing demand for tools to assist the building and analysis of biological networks exists in systems biology. We argue that the use of a formal approach is relevant...
212
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BMCBI
2005
15 years 6 months ago
2005
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
165
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RECOMB
2008
Springer
16 years 7 months ago
2008
Springer
A central challenge in systems biology is the reconstruction of biological networks from high-throughput data sets. A particularly difficult case of this is the inference of dynami...
191
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RECOMB
2005
Springer
16 years 7 months ago
2005
Springer
: A series of genome-scale algorithms and high-performance implementations is described and shown to be useful in the genetic analysis of gene transcription. With them it is possib...
179
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RECOMB
2004
Springer
16 years 7 months ago
2004
Springer
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...