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BMCBI
2007
109views more  BMCBI 2007»
15 years 6 months ago
Computational RNA secondary structure design: empirical complexity and improved methods
Background: We investigate the empirical complexity of the RNA secondary structure design problem, that is, the scaling of the typical difficulty of the design task for various cl...
Rosalía Aguirre-Hernández, Holger H....
RECOMB
2008
Springer
16 years 6 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
EDOC
2003
IEEE
15 years 12 months ago
Addressing Computational Viewpoint Design
Distributed System design is a highly complicated and non-trivial task. The problem is characterised by the need to design multi-threaded, multi-processor, and multimedia systems....
David H. Akehurst, John Derrick, A. Gill Waters
ACSD
2008
IEEE
130views Hardware» more  ACSD 2008»
16 years 1 months ago
BAM: BioAmbient machine
In recent years it has become clear that techniques developed for concurrent programming are in fact very useful for the analysis of complex systems in biology. To some level of i...
Vinod A. Muganthan, Andrew Phillips, Maria Grazia ...
AHS
2007
IEEE
226views Hardware» more  AHS 2007»
16 years 28 days ago
Application of Self-Configurability for Autonomous, Highly-Localized Self-Regulation
In this paper, key features of biological vs. artificial systems are identified, along with a synopsis of important consequences of those features. An artificial substrate that co...
Nicholas J. Macias, Peter M. Athanas