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JCB
2002
74views more  JCB 2002»
15 years 6 months ago
Using Substitution Matrices to Estimate Probability Distributions for Biological Sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Stafford Noble, Yoram Singe...
CMSB
2004
Springer
15 years 11 months ago
Beta Binders for Biological Interactions
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
Corrado Priami, Paola Quaglia
ALMOB
2006
110views more  ALMOB 2006»
15 years 6 months ago
New journal: Algorithms for Molecular Biology
This editorial announces Algorithms for Molecular Biology, a new online open access journal published by BioMed Central. By launching the first open access journal on algorithmic ...
Burkhard Morgenstern, Peter F. Stadler
SCFBM
2008
151views more  SCFBM 2008»
15 years 5 months ago
Wndchrm - an open source utility for biological image analysis
Background: Biological imaging is an emerging field, covering a wide range of applications in biological and clinical research. However, while machinery for automated experimentin...
Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz ...
DNA
2009
Springer
120views Bioinformatics» more  DNA 2009»
16 years 1 months ago
Strand Algebras for DNA Computing
We present a process algebra for DNA computing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into DNA structures.
Luca Cardelli