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» Comparison of Clique-Listing Algorithms
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BMCBI
2006
120views more  BMCBI 2006»
15 years 6 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
BMCBI
2005
138views more  BMCBI 2005»
15 years 6 months ago
Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
Background: The chemical property and biological function of a protein is a direct consequence of its primary structure. Several algorithms have been developed which determine ali...
Kshitiz Gupta, Dina Thomas, S. V. Vidya, K. V. Ven...
IPPS
1998
IEEE
15 years 10 months ago
A Performance Evaluation of CP List Scheduling Heuristics for Communication Intensive Task Graphs
List-based priority schedulers have long been one of the dominant classes of static scheduling algorithms. Such heuristics have been predominantly based around the "critical ...
Benjamin S. Macey, Albert Y. Zomaya
RTSS
1998
IEEE
15 years 10 months ago
Efficient Object Sharing in Quantum-Based Real-Time Systems
We consider the problem of implementing shared objects in uniprocessor and multiprocessor real-time systems in which tasks are executed using a scheduling quantum. In most quantum...
James H. Anderson, Rohit Jain, Kevin Jeffay
INFOCOM
1997
IEEE
15 years 10 months ago
Performance Modelling of Reliable Multicast Transmission
Our aim is to investigate reliable transmission for multicast communication and explore its relationship to multicast routing. We derive two characterizations that enable the comp...
Jörg Nonnenmacher, Ernst Biersack