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TCBB
2011
15 years 26 days ago
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
A TOPS diagram is a simplified description of the topology of a protein using a graph where nodes are α-helices and β-strands, and edges correspond to chirality relations and p...
J. Rocha
GECCO
2007
Springer
194views Optimization» more  GECCO 2007»
16 years 3 days ago
Hybrid coevolutionary algorithms vs. SVM algorithms
As a learning method support vector machine is regarded as one of the best classifiers with a strong mathematical foundation. On the other hand, evolutionary computational techniq...
Rui Li, Bir Bhanu, Krzysztof Krawiec
ESORICS
2004
Springer
15 years 11 months ago
Comparison Between Two Practical Mix Designs
We evaluate the anonymity provided by two popular email mix implementations, Mixmaster and Reliable, and compare their effectiveness through the use of simulations which model th...
Claudia Díaz, Len Sassaman, Evelyne Dewitte
IMR
2004
Springer
15 years 11 months ago
A Comparison of Inexact Newton and Coordinate Descent Mesh Optimization Techniques
We compare inexact Newton and coordinate descent methods for optimizing the quality of a mesh by repositioning the vertices, where quality is measured by the harmonic mean of the ...
Lori Freitag Diachin, Patrick M. Knupp, Todd S. Mu...
PPAM
2007
Springer
16 years 1 days ago
Applying SIMD Approach to Whole Genome Comparison on Commodity Hardware
Abstract. Whole genome comparison compares (aligns) two genome sequences assuming that analogous characteristics may be found. In this paper, we present an SIMD version of the Smit...
Arpith C. Jacob, Marcin Paprzycki, Maria Ganzha, S...