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» Comparison of Clique-Listing Algorithms
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APBC
2004
108views Bioinformatics» more  APBC 2004»
15 years 8 months ago
Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu,...
ACL
2003
15 years 8 months ago
Generalized Algorithms for Constructing Statistical Language Models
Recent text and speech processing applications such as speech mining raise new and more general problems related to the construction of language models. We present and describe in...
Cyril Allauzen, Mehryar Mohri, Brian Roark
JCB
2006
115views more  JCB 2006»
15 years 6 months ago
Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees
Tree structures are useful for describing and analyzing biological objects and processes. Consequently, there is a need to design metrics and algorithms to compare trees. A natura...
Yair Horesh, Ramit Mehr, Ron Unger
BMCBI
2005
92views more  BMCBI 2005»
15 years 6 months ago
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
Background: In a previous report (La et al., Proteins, 2005), we have demonstrated that the identification of phylogenetic motifs, protein sequence fragments conserving the overal...
David La, Dennis R. Livesay
CIC
2004
118views Communications» more  CIC 2004»
15 years 8 months ago
An Efficient Delay Sensitive Multicast Routing Algorithm
As a key issue in multicast routing with quality of service (QoS) support, constrained minimum Steiner tree (CMST) problem has been a research focus for more than a decade, and ten...
Gang Feng