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» Comparison of Clique-Listing Algorithms
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RECOMB
2007
Springer
16 years 6 months ago
QNet: A Tool for Querying Protein Interaction Networks
Molecular interaction databases can be used to study the evolution of molecular pathways across species. Querying such pathways is a challenging computational problem, and recent e...
Banu Dost, Tomer Shlomi, Nitin Gupta 0002, Eytan R...
RECOMB
2003
Springer
16 years 6 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
JCDL
2009
ACM
154views Education» more  JCDL 2009»
16 years 1 months ago
An alignment based system for chord sequence retrieval
Music retrieval systems for Western tonal music digital libraries have to consider rhythmic, timbral, melodic and harmonic information. Most existing retrieval systems only take i...
Pierre Hanna, Matthias Robine, Thomas Rocher
ICDE
2005
IEEE
122views Database» more  ICDE 2005»
16 years 2 days ago
Signature-based Filtering Techniques for Structural Joins of XML Data
Queries on XML documents typically combine selections on element contents, and, via path expressions, the structural relationships between tagged elements. Efficient support for ...
Huan Huo, Guoren Wang, Chuan Yang, Rui Zhou
ISAAC
2004
Springer
106views Algorithms» more  ISAAC 2004»
15 years 12 months ago
Minimum Common String Partition Problem: Hardness and Approximations
String comparison is a fundamental problem in computer science, with applications in areas such as computational biology, text processing or compression. In this paper we address t...
Avraham Goldstein, Petr Kolman, Jie Zheng