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BMCBI
2005
119views more  BMCBI 2005»
15 years 6 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
BMCBI
2010
137views more  BMCBI 2010»
15 years 6 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
MLQ
2002
87views more  MLQ 2002»
15 years 5 months ago
A Relationship between Equilogical Spaces and Type Two Effectivity
Abstract. In this paper I compare two well studied approaches to topological semantics-the domain-theoretic approach, exemplified by the category of countably based equilogical spa...
Andrej Bauer
BMCBI
2007
149views more  BMCBI 2007»
15 years 6 months ago
SAMPI: Protein Identification with Mass Spectra Alignments
Background: Mass spectrometry based peptide mass fingerprints (PMFs) offer a fast, efficient, and robust method for protein identification. A protein is digested (usually by tryps...
Hans-Michael Kaltenbach, Andreas Wilke, Sebastian ...
BIOCOMP
2008
15 years 7 months ago
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar