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BMCBI
2010
189views more  BMCBI 2010»
15 years 6 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
ICPR
2006
IEEE
16 years 7 months ago
Automatic Alignment of High-Resolution NMR Spectra Using a Bayesian Estimation Approach
Nuclear magnetic resonance (NMR) spectral analysis has recently become one of the major means for the detection and recognition of metabolic changes of disease state, physiologica...
Seoung Bum Kim, Zhou Wang
AVSS
2006
IEEE
16 years 3 days ago
A Smith-Waterman Local Alignment Approach for Spatial Activity Recognition
In this paper we address the spatial activity recognition problem with an algorithm based on Smith-Waterman (SW) local alignment. The proposed SW approach utilises dynamic program...
Daniel E. Riedel, Svetha Venkatesh, Wanquan Liu
BMCBI
2005
158views more  BMCBI 2005»
15 years 6 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
EMNLP
2007
15 years 7 months ago
A Sequence Alignment Model Based on the Averaged Perceptron
We describe a discriminatively trained sequence alignment model based on the averaged perceptron. In common with other approaches to sequence modeling using perceptrons, and in co...
Dayne Freitag, Shahram Khadivi