2345 search results - page 143 / 469 » Comparing sequence scaffolds |
154
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IPPS
2006
IEEE
16 years 9 days ago
2006
IEEE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
169
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BIBE
2005
IEEE
15 years 12 months ago
2005
IEEE
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
143
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COLT
2004
Springer
15 years 11 months ago
2004
Springer
We study the properties of the Minimum Description Length principle for sequence prediction, considering a two-part MDL estimator which is chosen from a countable class of models....
178
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WABI
2004
Springer
15 years 11 months ago
2004
Springer
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
167
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SC
2003
ACM
15 years 11 months ago
2003
ACM
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...