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BMCBI
2007
106views more  BMCBI 2007»
15 years 7 months ago
Constructing a meaningful evolutionary average at the phylogenetic center of mass
Background: As a consequence of the evolutionary process, data collected from related species tend to be similar. This similarity by descent can obscure subtler signals in the dat...
Eric A. Stone, Arend Sidow
BMCBI
2008
140views more  BMCBI 2008»
15 years 7 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
BMCBI
2010
94views more  BMCBI 2010»
15 years 7 months ago
Comparison study of microarray meta-analysis methods
Background: Meta-analysis methods exist for combining multiple microarray datasets. However, there are a wide range of issues associated with microarray meta-analysis and a limite...
Anna Campain, Yee Hwa Yang
BMCBI
2008
101views more  BMCBI 2008»
15 years 7 months ago
Reranking candidate gene models with cross-species comparison for improved gene prediction
Background: Most gene finders score candidate gene models with state-based methods, typically HMMs, by combining local properties (coding potential, splice donor and acceptor patt...
Qian Liu, Koby Crammer, Fernando C. N. Pereira, Da...
ENVSOFT
2007
54views more  ENVSOFT 2007»
15 years 6 months ago
Evaluation of landscape and instream modeling to predict watershed nutrient yields
The project goal was to loosely couple the SWAT model and the QUAL2E model and compare their combined ability to predict total phosphorus (TP) and NO3-N plus NO2-N yields to the a...
K. W. Migliaccio, I. Chaubey, B. E. Haggard