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217
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SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
15 years 11 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
201
Voted
BMCBI
2008
148views more  BMCBI 2008»
15 years 7 months ago
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
Background: Liquid chromatography coupled to mass spectrometry (LC-MS) has become a prominent tool for the analysis of complex proteomics and metabolomics samples. In many applica...
Eva Lange, Ralf Tautenhahn, Steffen Neumann, Cleme...
BMCBI
2006
158views more  BMCBI 2006»
15 years 6 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
BMCBI
2007
113views more  BMCBI 2007»
15 years 6 months ago
Statistical tools for transgene copy number estimation based on real-time PCR
Background: As compared with traditional transgene copy number detection technologies such as Southern blot analysis, real-time PCR provides a fast, inexpensive and high-throughpu...
Joshua S. Yuan, Jason N. Burris, Nathan R. Stewart...
ICDE
2009
IEEE
135views Database» more  ICDE 2009»
16 years 8 months ago
Space-Constrained Gram-Based Indexing for Efficient Approximate String Search
Abstract-- Answering approximate queries on string collections is important in applications such as data cleaning, query relaxation, and spell checking, where inconsistencies and e...
Alexander Behm, Shengyue Ji, Chen Li, Jiaheng Lu