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BMCBI
2010
189views more  BMCBI 2010»
15 years 6 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
16 years 12 days ago
An Algebraic Geometry Approach to Protein Structure Determination from NMR Data
Our paper describes the first provably-efficient algorithm for determining protein structures de novo, solely from experimental data. We show how the global nature of a certain ...
Lincong Wang, Ramgopal R. Mettu, Bruce Randall Don...
BMCBI
2008
114views more  BMCBI 2008»
15 years 6 months ago
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...
Michael Hsing, Artem Cherkasov
184
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BMCBI
2004
98views more  BMCBI 2004»
15 years 6 months ago
STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes
Background: The integration of many aspects of protein/DNA structure analysis is an important requirement for software products in general area of structural bioinformatics. In fa...
Roberto H. Higa, Roberto C. Togawa, Arnaldo J. Mon...
ASIACRYPT
2010
Springer
15 years 4 months ago
Structured Encryption and Controlled Disclosure
We consider the problem of encrypting structured data (e.g., a web graph or a social network) in such a way that it can be efficiently and privately queried. For this purpose, we ...
Melissa Chase, Seny Kamara