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ALGORITHMICA
2006
132views more  ALGORITHMICA 2006»
15 years 6 months ago
Straight-Line Drawing Algorithms for Hierarchical Graphs and Clustered Graphs
Hierarchical graphs and clustered graphs are useful non-classical graph models for structured relational information. Hierarchical graphs are graphs with layering structures; clus...
Peter Eades, Qing-Wen Feng, Xuemin Lin, Hiroshi Na...
JCB
2007
106views more  JCB 2007»
15 years 6 months ago
Clustered Sequence Representation for Fast Homology Search
We present a novel approach to managing redundancy in sequence databanks such as GenBank. We store clusters of near-identical sequences as a representative union-sequence and a se...
Michael Cameron, Yaniv Bernstein, Hugh E. Williams
PAMI
2010
192views more  PAMI 2010»
15 years 5 months ago
Multiway Spectral Clustering with Out-of-Sample Extensions through Weighted Kernel PCA
—A new formulation for multiway spectral clustering is proposed. This method corresponds to a weighted kernel principal component analysis (PCA) approach based on primal-dual lea...
Carlos Alzate, Johan A. K. Suykens
EVOW
2005
Springer
16 years 7 days ago
Order Preserving Clustering over Multiple Time Course Experiments
Abstract. Clustering still represents the most commonly used technique to analyze gene expression data—be it classical clustering approaches that aim at finding biologically rel...
Stefan Bleuler, Eckart Zitzler
BMCBI
2006
112views more  BMCBI 2006»
15 years 6 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore