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IPPS
2008
IEEE
16 years 27 days ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
CIKM
2008
Springer
15 years 8 months ago
A consensus based approach to constrained clustering of software requirements
Managing large-scale software projects involves a number of activities such as viewpoint extraction, feature detection, and requirements management, all of which require a human a...
Chuan Duan, Jane Cleland-Huang, Bamshad Mobasher
BMCBI
2005
73views more  BMCBI 2005»
15 years 6 months ago
Evaluation of Glycine max mRNA clusters
Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolut...
Ronald L. Frank, Fikret Erçal
DATE
2009
IEEE
113views Hardware» more  DATE 2009»
16 years 1 months ago
Algorithms for the automatic extension of an instruction-set
Abstract—In this paper, two general algorithms for the automatic generation of instruction-set extensions are presented. The basic instruction set of a reconfigurable architectu...
Carlo Galuzzi, Dimitris Theodoropoulos, Roel Meeuw...
BIOCOMP
2008
15 years 8 months ago
Prediction of Protein Function Using Graph Container and Message Passing
We introduce a novel parameter called container flux, which is used to measure the information sharing capacity between two distinct nodes in a graph. Other useful information, bot...
Hongbo Zhou, Qiang Shawn Cheng, Mehdi Zargham