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BIBE
2003
IEEE
133views Bioinformatics» more  BIBE 2003»
16 years 3 days ago
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...
DDEP
2000
Springer
15 years 11 months ago
GODDAG: A Data Structure for Overlapping Hierarchies
Abstract. Notations like SGML and XML represent document structures using tree structures; while this is in general a step forward from earlier systems, it creates certain difficul...
C. M. Sperberg-McQueen, Claus Huitfeldt
BMCBI
2005
125views more  BMCBI 2005»
15 years 6 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
VMCAI
2010
Springer
16 years 4 months ago
Building a Calculus of Data Structures
Abstract. Techniques such as verification condition generation, preditraction, and expressive type systems reduce software verification to proving formulas in expressive logics. Pr...
Viktor Kuncak, Ruzica Piskac, Philippe Suter, Thom...
NAR
2011
214views Computer Vision» more  NAR 2011»
14 years 9 months ago
IEDB-3D: structural data within the immune epitope database
IEDB-3D is the 3D structural component of the Immune Epitope Database (IEDB) available via the ‘Browse by 3D Structure’ page at http://www.iedb .org. IEDB-3D catalogs B- and T...
Julia V. Ponomarenko, Nikitas Papangelopoulos, Dir...