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» Building Large Knowledge Bases in Molecular Biology
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BMCBI
2006
169views more  BMCBI 2006»
15 years 6 months ago
Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
Background: The accomplishment of the various genome sequencing projects resulted in accumulation of massive amount of gene sequence information. This calls for a large-scale comp...
Zhengdeng Lei, Yang Dai
BMCBI
2005
117views more  BMCBI 2005»
15 years 6 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai
COLT
2008
Springer
15 years 7 months ago
Almost Tight Upper Bound for Finding Fourier Coefficients of Bounded Pseudo- Boolean Functions
A pseudo-Boolean function is a real-valued function defined on {0, 1}n . A k-bounded function is a pseudo-Boolean function that can be expressed as a sum of subfunctions each of w...
Sung-Soon Choi, Kyomin Jung, Jeong Han Kim
BMCBI
2008
211views more  BMCBI 2008»
15 years 6 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2008
100views more  BMCBI 2008»
15 years 6 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake