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IPPS
2009
IEEE
16 years 1 months ago
Long time-scale simulations of in vivo diffusion using GPU hardware
To address the problem of performing long time simulations of biochemical pathways under in vivo cellular conditions, we have developed a lattice-based, reaction-diffusion model t...
Elijah Roberts, John E. Stone, Leonardo Sepulveda,...
IPPS
2009
IEEE
16 years 1 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
MIDDLEWARE
2009
Springer
16 years 1 months ago
Rhizoma: A Runtime for Self-deploying, Self-managing Overlays
Abstract. The trend towards cloud and utility computing infrastructures raises challenges not only for application development, but also for management: diverse resources, changing...
Qin Yin, Adrian Schüpbach, Justin Cappos, And...
GROUP
2009
ACM
16 years 1 months ago
Lazy scheduling of processing and transmission tasks in collaborative systems
A collaborative system must perform both processing and transmission tasks. We present a policy for scheduling these tasks on a single core that is inspired by studies of human pe...
Sasa Junuzovic, Prasun Dewan
SIGCOMM
2009
ACM
16 years 1 months ago
Cutting the electric bill for internet-scale systems
Energy expenses are becoming an increasingly important fraction of data center operating costs. At the same time, the energy expense per unit of computation can vary significantl...
Asfandyar Qureshi, Rick Weber, Hari Balakrishnan, ...