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ESWA
2006
110views more  ESWA 2006»
15 years 6 months ago
XKey: A tool for the generation of identification keys
This paper presents the development of XKey, a tool for generating taxonomical identification keys by means of decision tree construction. The tool is based on an XML standard for...
Miguel Delgado Calvo-Flores, Waldo Fajardo Contrer...
BMCBI
2005
88views more  BMCBI 2005»
15 years 6 months ago
Using large-scale perturbations in gene network reconstruction
Background: Recent analysis of the yeast gene network shows that most genes have few inputs, indicating that enumerative gene reconstruction methods are both useful and computatio...
Thomas MacCarthy, Andrew Pomiankowski, Robert Seym...
NAR
2002
105views more  NAR 2002»
15 years 6 months ago
AraC-XylS database: a family of positive transcriptional regulators in bacteria
The AraC-XylS database contains information about a family of positive transcriptional regulators broadly distributed in bacteria. This specific database focuses on protein sequen...
Raquel Tobes, Juan L. Ramos
SAC
2008
ACM
15 years 6 months ago
Bayesian inference for a discretely observed stochastic kinetic model
The ability to infer parameters of gene regulatory networks is emerging as a key problem in systems biology. The biochemical data are intrinsically stochastic and tend to be observ...
Richard J. Boys, Darren J. Wilkinson, Thomas B. L....
IPL
2010
71views more  IPL 2010»
15 years 5 months ago
New common ancestor problems in trees and directed acyclic graphs
We derive a new generalization of lowest common ancestors (LCAs) in dags, called the lowest single common ancestor (LSCA). We show how to preprocess a static dag in linear time su...
Johannes Fischer, Daniel H. Huson
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