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AB
2007
Springer
16 years 24 days ago
Attenuation Regulation as a Term Rewriting System
Abstract The classical attenuation regulation of gene expression in bacteria is considered. We propose to represent the secondary RNA structure in the leader region of a gene or an...
Eugene Asarin, Thierry Cachat, Alexander Seliverst...
DAC
2007
ACM
16 years 7 months ago
Synthesizing Stochasticity in Biochemical Systems
Randomness is inherent to biochemistry: at each instant, the sequence of reactions that fires is a matter of chance. Some biological systems exploit such randomness, choosing betw...
Brian Fett, Jehoshua Bruck, Marc D. Riedel
ARC
2007
Springer
95views Hardware» more  ARC 2007»
15 years 6 months ago
Time delay systems with distribution dependent dynamics
General delay dynamical systems in which uncertainty is present in the form of probability measure dependent dynamics are considered. Several motivating examples arising in biolog...
H. T. Banks, Sava Dediu, Hoan K. Nguyen
BMCBI
2006
166views more  BMCBI 2006»
15 years 6 months ago
SEQOPTICS: a protein sequence clustering system
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
TACAS
2007
Springer
91views Algorithms» more  TACAS 2007»
16 years 21 days ago
Planned and Traversable Play-Out: A Flexible Method for Executing Scenario-Based Programs,
We introduce a novel approach to the smart execution of scenario-based models of reactive systems, such as those resulting from the multi-modal inter-object language of live sequen...
David Harel, Itai Segall