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BIOINFORMATICS
2005
140views more  BIOINFORMATICS 2005»
15 years 6 months ago
Profile-based direct kernels for remote homology detection and fold recognition
Motivation: Remote homology detection between protein sequences is a central problem in computational biology. Supervised learning algorithms based on support vector machines are ...
Huzefa Rangwala, George Karypis
IJFCS
2002
58views more  IJFCS 2002»
15 years 6 months ago
Vector Algorithms for Approximate String Matching
Vector algorithms allow the computation of an output vector r = r1r2 :::rm given an input vector e = e1e2 :::em in a bounded number of operations, independent of m the length of t...
Anne Bergeron, Sylvie Hamel
NECO
2007
87views more  NECO 2007»
15 years 5 months ago
Reinforcement Learning State Estimator
cal networks in the learning of abstract and effector-specific representations of motor sequences. Neuroimage. 32, 714-727. (Neuroimage Editor’s Choice Award, 2006) Daw, N. D. Do...
Jun Morimoto, Kenji Doya
CBMS
2008
IEEE
15 years 8 months ago
Generating GO Slim Using Relational Database Management Systems to Support Proteomics Analysis
The Gene Ontology Consortium built the Gene Ontology database (GO) to address the need for a common standard in naming genes and gene products. Using different names for the same ...
Getiria Onsongo, Hongwei Xie, Timothy J. Griffin, ...
BMCBI
2007
126views more  BMCBI 2007»
15 years 6 months ago
Multiple non-collinear TF-map alignments of promoter regions
Background: The analysis of the promoter sequence of genes with similar expression patterns is a basic tool to annotate common regulatory elements. Multiple sequence alignments ar...
Enrique Blanco, Roderic Guigó, Xavier Messe...