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BMCBI
2006
116views more  BMCBI 2006»
15 years 6 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
FOCS
2005
IEEE
16 years 2 days ago
The Closest Substring problem with small distances
In the CLOSEST SUBSTRING problem k strings s1, ..., sk are given, and the task is to find a string s of length L such that each string si has a consecutive substring of length L ...
Dániel Marx
PAKDD
2004
ACM
94views Data Mining» more  PAKDD 2004»
15 years 11 months ago
Towards Optimizing Conjunctive Inductive Queries
Inductive queries are queries to an inductive database that generate a set of patterns in a data mining context. Inductive querying poses new challenges to database and data mining...
Johannes Fischer, Luc De Raedt
JMLR
2006
125views more  JMLR 2006»
15 years 6 months ago
Linear Programming Relaxations and Belief Propagation - An Empirical Study
The problem of finding the most probable (MAP) configuration in graphical models comes up in a wide range of applications. In a general graphical model this problem is NP hard, bu...
Chen Yanover, Talya Meltzer, Yair Weiss
IADIS
2008
15 years 8 months ago
Sisa: Seeded Iterative Signature Algorithm for Biclustering Gene Expression Data
One approach to reduce the complexity of the task in the analysis of large scale genome-wide expression is to group the genes showing similar expression patterns into what are cal...
Neelima Gupta, Seema Aggarwal