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IPPS
2008
IEEE
16 years 26 days ago
Parallelized preprocessing algorithms for high-density oligonucleotide arrays
Studies of gene expression using high-density oligonucleotide microarrays have become standard in a variety of biological contexts. The data recorded using the microarray techniqu...
Markus Schmidberger, Ulrich Mansmann
HIPC
2007
Springer
16 years 18 days ago
Molecular Dynamics Simulations on Commodity GPUs with CUDA
Molecular dynamics simulations are a common and often repeated task in molecular biology. The need for speeding up this treatment comes from the requirement for large system simula...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang ...
SC
2000
ACM
15 years 10 months ago
Data Access Performance in a Large and Dynamic Pharmaceutical Drug Candidate Database
An explosion in the amount of data generated through chemical and biological experimentation has been observed in recent years. This rapid proliferation of vast amounts of data ha...
Zina Ben-Miled, Yang Liu, David Powers, Omran A. B...
IPPS
2006
IEEE
16 years 14 days ago
Parallel implementation and performance characterization of MUSCLE
Multiple sequence alignment is a fundamental and very computationally intensive task in molecular biology. MUSCLE, a new algorithm for creating multiple alignments of protein sequ...
Xi Deng, Eric Li, Jiulong Shan, Wenguang Chen
GI
2004
Springer
15 years 12 months ago
Saliency Extraction for Gaze-Contingent Displays
: Organic Computing is beginning to provide computer systems with organic and biological properties. We believe these systems will benefit from user interfaces that integrate the ...
Martin Böhme, Christopher Krause, Thomas Mart...