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RECOMB
2010
Springer
16 years 1 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
RECOMB
2009
Springer
16 years 1 months ago
Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombination
This paper presents a new approach to site-directed recombination, swapping combinations of selected discontiguous fragments from a source protein in place of corresponding fragmen...
Wei Zheng, Karl E. Griswold, Chris Bailey-Kellogg
BICOB
2009
Springer
16 years 1 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
ASM
2000
ASM
15 years 10 months ago
Report on a Practical Application of ASMs in Software Design
ASMs have been used at Siemens Corporate Technology to design a component in a software package called FALKO. Main purpose of FALKO is the construction and validation of timetables...
Egon Börger, Peter Päppinghaus, Joachim ...
RECOMB
1999
Springer
15 years 10 months ago
Classifying proteins by family using the product of correlated p-values
An important goal in bioinformatics is determining the homology and function of proteins from their sequences. Pairwise sequence similarity algorithms are often employed for this ...
Timothy L. Bailey, William Noble Grundy