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BCB
2010
156views Bioinformatics» more  BCB 2010»
15 years 1 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
NAR
2010
159views more  NAR 2010»
15 years 1 months ago
GeneSigDB - a curated database of gene expression signatures
The primary objective of most gene expression studies is the identification of one or more gene signatures; lists of genes whose transcriptional levels are uniquely associated wit...
Aedín C. Culhane, Thomas Schwarzl, Razvan S...
ICASSP
2011
IEEE
14 years 10 months ago
A Bayesian marked point process for object detection. Application to muse hyperspectral data
Marked point processes have received a great attention in the recent years, for their ability to extract objects in large data sets as those obtained in biological studies or hype...
Florent Chatelain, Aude Costard, Olivier J. J. Mic...
NAR
2011
252views Computer Vision» more  NAR 2011»
14 years 9 months ago
BISC: Binary SubComplexes in proteins database
Binary subcomplexes in proteins database (BISC) is a new protein–protein interaction (PPI) database linking up the two communities most active in their characterization: structu...
Thomas Juettemann, Dietlind L. Gerloff
IPPS
2008
IEEE
16 years 27 days ago
Reducing the run-time of MCMC programs by multithreading on SMP architectures
The increasing availability of multi-core and multiprocessor architectures provides new opportunities for improving the performance of many computer simulations. Markov Chain Mont...
Jonathan M. R. Byrd, Stephen A. Jarvis, A. H. Bhal...