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CORR
2007
Springer
81views Education» more  CORR 2007»
15 years 6 months ago
Faster exon assembly by sparse spliced alignment
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is spliced alignment, proposed by Gelf...
Alexandre Tiskin
IPL
2006
67views more  IPL 2006»
15 years 6 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke
NAR
2006
107views more  NAR 2006»
15 years 6 months ago
CorGen - measuring and generating long-range correlations for DNA sequence analysis
CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
Philipp W. Messer, Peter F. Arndt
NAR
2006
129views more  NAR 2006»
15 years 6 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael
TCS
2008
15 years 6 months ago
Motif patterns in 2D
Motif patterns consisting of sequences of intermixed solid and don't care characters have been introduced and studied in connection with pattern discovery problems of computa...
Alberto Apostolico, Laxmi Parida, Simona E. Rombo