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WSC
2008
15 years 8 months ago
Multi-resolution spatial simulation for molecular crowding
Spatial phenomena attract increasingly interest in computational biology. Molecular crowding, i.e. a dense population of macromolecules, is known to have a significant impact on t...
Matthias Jeschke, Adelinde M. Uhrmacher
ALMOB
2008
69views more  ALMOB 2008»
15 years 6 months ago
Learning from positive examples when the negative class is undetermined- microRNA gene identification
Background: The application of machine learning to classification problems that depend only on positive examples is gaining attention in the computational biology community. We an...
Malik Yousef, Segun Jung, Louise C. Showe, Michael...
CORR
2010
Springer
138views Education» more  CORR 2010»
15 years 6 months ago
On building minimal automaton for subset matching queries
We address the problem of building an index for a set D of n strings, where each string location is a subset of some finite integer alphabet of size , so that we can answer effici...
Kimmo Fredriksson
CORR
2010
Springer
200views Education» more  CORR 2010»
15 years 6 months ago
A Multilevel Approach For Nonnegative Matrix Factorization
Nonnegative Matrix Factorization (NMF) is the problem of approximating a nonnegative matrix with the product of two low-rank nonnegative matrices and has been shown to be particul...
Nicolas Gillis, François Glineur
JCSS
2008
80views more  JCSS 2008»
15 years 6 months ago
Improved bounds on sorting by length-weighted reversals
We study the problem of sorting binary sequences and permutations by length-weighted reversals. We consider a wide class of cost functions, namely f( ) = for all 0, where is the...
Michael A. Bender, Dongdong Ge, Simai He, Haodong ...