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BMCBI
2006
157views more  BMCBI 2006»
15 years 6 months ago
Determination of the minimum number of microarray experiments for discovery of gene expression patterns
Background: One type of DNA microarray experiment is discovery of gene expression patterns for a cell line undergoing a biological process over a series of time points. Two import...
Fang-Xiang Wu, W. J. Zhang, Anthony J. Kusalik
BMCBI
2004
96views more  BMCBI 2004»
15 years 6 months ago
A hybrid clustering approach to recognition of protein families in 114 microbial genomes
Background: Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function). Standar...
Timothy J. Harlow, J. Peter Gogarten, Mark A. Raga...
LICS
2008
IEEE
16 years 29 days ago
A Logical Characterization of Individual-Based Models
Individual-based models are a relatively new approach to modelling dynamical systems of interacting entities, for example molecules in a biological cell. Although they are computa...
James F. Lynch
CEC
2007
IEEE
15 years 10 months ago
Psim: a simulator for biomolecular dynamics based on P systems
Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics is computed by metabolic algorithms which...
Luca Bianco, Vincenzo Manca, Luca Marchetti, Miche...
IPPS
2009
IEEE
16 years 1 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...