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BIB
2007
101views more  BIB 2007»
15 years 6 months ago
Discovering and detecting transposable elements in genome sequences
The contribution of transposable elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated in...
Casey M. Bergman, Hadi Quesneville
STOC
1995
ACM
194views Algorithms» more  STOC 1995»
15 years 10 months ago
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
Genomes frequently evolve by reversals ␳(i, j) that transform a gene order ␲1 . . . ␲i␲iϩ1 . . . ␲jϪ1␲j . . . ␲n into ␲1 . . . ␲i␲jϪ1 . . . ␲iϩ1␲j . . ....
Sridhar Hannenhalli, Pavel A. Pevzner
206
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ACST
2006
15 years 8 months ago
PDC: Pattern discovery with confidence in DNA sequences
Pattern discovery in DNA sequences is one of the most challenging tasks in molecular biology and computer science. The main goal of pattern discovery in DNA sequences is to identi...
Yi Lu, Shiyong Lu, Farshad Fotouhi, Yan Sun, Zijia...
NIPS
2000
15 years 8 months ago
Foundations for a Circuit Complexity Theory of Sensory Processing
We introduce total wire length as salient complexity measure for an analysis of the circuit complexity of sensory processing in biological neural systems and neuromorphic engineer...
Robert A. Legenstein, Wolfgang Maass
DAGSTUHL
2006
15 years 8 months ago
Static Analysis of a Model of the LDL Degradation Pathway
BioAmbients is a derivative of mobile ambients that has shown promise of describing interesting features of the behaviour of biological systems. As for other ambient calculi static...
Henrik Pilegaard, Hanne Riis Nielson, Flemming Nie...