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SODA
1998
ACM
157views Algorithms» more  SODA 1998»
15 years 8 months ago
A Polynomial Time Approximation Scheme for Minimum Routing Cost Spanning Trees
Given an undirected graph with nonnegative costs on the edges, the routing cost of any of its spanning trees is the sum over all pairs of vertices of the cost of the path between t...
Bang Ye Wu, Giuseppe Lancia, Vineet Bafna, Kun-Mao...
ECCB
2002
IEEE
15 years 11 months ago
Stochastic roadmap simulation for the study of ligand-protein interactions
The dynamics of ligand-protein interactions are necessary to understand for the design of novel therapeutic agents. In this paper, we establish the use of Stochastic Roadmap Simul...
Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varm...
BMCBI
2004
208views more  BMCBI 2004»
15 years 6 months ago
Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures
Background: Hidden Markov Models (HMMs) have proven very useful in computational biology for such applications as sequence pattern matching, gene-finding, and structure prediction...
Vadim Alexandrov, Mark Gerstein
IPPS
2009
IEEE
16 years 1 months ago
Accelerating leukocyte tracking using CUDA: A case study in leveraging manycore coprocessors
The availability of easily programmable manycore CPUs and GPUs has motivated investigations into how to best exploit their tremendous computational power for scientific computing...
Michael Boyer, David Tarjan, Scott T. Acton, Kevin...
SC
2000
ACM
15 years 11 months ago
Parallel Phylogenetic Inference
Recent advances in DNA sequencing technology have created large data sets upon which phylogenetic inference can be performed. However, current research is limited by the prohibiti...
Quinn Snell, Michael Whiting, Mark J. Clement, Dav...