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ISMB
2003
15 years 8 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh
ACL
2009
15 years 4 months ago
Automatic Cost Estimation for Tree Edit Distance Using Particle Swarm Optimization
Recently, there is a growing interest in working with tree-structured data in different applications and domains such as computational biology and natural language processing. Mor...
Yashar Mehdad
RECOMB
2004
Springer
16 years 7 months ago
A discriminative model for identifying spatial cis-regulatory modules
Transcriptional regulation is mediated by the coordinated binding of transcription factors to the upstream regions of genes. In higher eukaryotes, the binding sites of cooperating...
Eran Segal, Roded Sharan
BICOB
2009
Springer
16 years 1 months ago
Graph Spectral Approach for Identifying Protein Domains
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...
Hari Krishna Yalamanchili, Nita Parekh
ECCB
2008
IEEE
15 years 8 months ago
Towards de novo identification of metabolites by analyzing tandem mass spectra
Abstract. Mass spectrometry is among the most widely used technologies in proteomics and metabolomics. For metabolites, de novo interpretation of spectra is even more important tha...
Sebastian Böcker, Florian Rasche