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RECOMB
2011
Springer
14 years 9 months ago
Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals
Abstract. Haplotypes, as they specify the linkage patterns between dispersed genetic variations, provide important information for understanding the genetics of human traits. Howev...
Xin Li, Jing Li
IPPS
2006
IEEE
16 years 21 days ago
Parallel multiple sequence alignment with local phylogeny search by simulated annealing
The problem of multiple sequence alignment is one of the most important problems in computational biology. In this paper we present a new method that simultaneously performs multi...
Jaroslaw Zola, Denis Trystram, Andrei Tchernykh, C...
NAACL
2010
15 years 4 months ago
Prenominal Modifier Ordering via Multiple Sequence Alignment
Producing a fluent ordering for a set of prenominal modifiers in a noun phrase (NP) is a problematic task for natural language generation and machine translation systems. We prese...
Aaron Dunlop, Margaret Mitchell, Brian Roark
ECCB
2008
IEEE
16 years 1 months ago
Functional coherence in domain interaction networks
Motivation: Extracting functional information from protein–protein interactions (PPI) poses significant challenges arising from the noisy, incomplete, generic and static nature...
Jayesh Pandey, Mehmet Koyutürk, Shankar Subra...
RECOMB
2006
Springer
16 years 7 months ago
Simple and Fast Inverse Alignment
For as long as biologists have been computing alignments of sequences, the question of what values to use for scoring substitutions and gaps has persisted. While some choices for s...
John D. Kececioglu, Eagu Kim